when debugging main.xml the Application object is not understood by the debugger.
to duplicate, call init, and in the init method have a reference to the Application object, something like below
<mx:Application
xmlns:mx="http://www.adobe.com/2006/mxml"
xmlns="*"
pageTitle="EBT Retailer"
backgroundColor="#FFFFFF"
initialize="init();">
private function init():void {
Application.application.user.isGuest = "Y";
Application.application.user.isLogonStateUserId = "Y";
}